Research

University of California, Riverside

Jun 2023 — Present
Graduate Student Researcher
Dept. of Computer Science & Engineering
⇾ Conduct research on machine learning, representation learning, and generative modeling applied to protein and antibody systems, with an emphasis on scalable and generalizable model design.
⇾ Designed, trained and fine-tuned protein language models and contrastive representation learning frameworks to capture binding behavior and mutation-driven effects across antibody–antigen pairs.
⇾ Developed structure-aware learning approaches that integrate sequence and 3D structural information, demonstrating improved predictive performance over sequence-only models.
⇾ Built generative and discriminative ML pipelines for antibody interaction modeling, embedding learning, and binding classification across large-scale datasets (500K+ samples).
⇾ Created SPICE, an end-to-end, production-grade web platform for structural protein–protein interaction analysis, enabling comparative analysis of contacts, energetics, and geometric features across variants.
⇾ Published research in peer-reviewed journals, conferences and workshops (JCIM, PLOS, AAAI, NeurIPS) and collaborated with interdisciplinary teams spanning machine learning and computational biology.

Exact Sciences, San Diego

Jun 2025 — Sep 2025
Machine Learning Intern
Bioinformatics R&D
⇾ Fine-tuned nucleotide transformer models to predict probe performance in hybrid-capture based cancer detection workflows, validating the feasibility of ML-driven probe optimization.
⇾ Analyzed large-scale experimental sequencing and assay data, translating raw outputs into model-ready representations and performance benchmarks.
⇾ Defined and implemented task-specific evaluation metrics, including sensitivity- and specificity–aware performance measures, to more accurately capture probe effectiveness in hybrid capture mechanisms.
⇾ Trained and evaluated predictive models achieving around 80% accuracy, providing quantitative evidence to support downstream research and future development directions.
⇾ Collaborated closely with interdisciplinary teams across machine learning, experimental biology, and applied research to align modeling assumptions with biological constraints.

Teaching

University of California, Riverside

Jan — Mar 2024
Graduate Teaching Assistant
Dept. of Computer Science & Engineering
Supported instruction for undergraduate courses in "database systems" and "alogrithmic techniques in bioinformatics". Led discussion sections, held office hours, and provided project guidance.

Brac University, Dhaka

Jan 2018 — Sep 2022
Lecturer
Dept. of Computer Science & Engineering
Independently taught core undergraduate CS courses and guiding students through applied ML projects. Courses taught: Programming Language I & II, Discrete Mathematics, Database Management Systems, Operating Systems, Artificial Intelligence.

Uttara University, Dhaka

Jan 2018 — Sep 2022
Lecturer
Dept. of Computer Science & Engineering
Independently taught core undergraduate CS courses. Courses taught: Data Structures, Algorithms, Database Systems.